Cycloalkanediamine derivatives as novel blood coagulation factor Xa inhibitors
Nagata, T., Yoshino, T., Haginoya, N., Yoshikawa, K., Isobe, Y., Furugohri, T., Kanno, H.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Coagulation factor X, heavy chain | 233 | Homo sapiens | Mutation(s): 0  EC: 3.4.21.6 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00742 (Homo sapiens) Explore P00742  Go to UniProtKB:  P00742 | |||||
PHAROS:  P00742 GTEx:  ENSG00000126218  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00742 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Coagulation factor X, light chain | 54 | Homo sapiens | Mutation(s): 0  EC: 3.4.21.6 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P00742 (Homo sapiens) Explore P00742  Go to UniProtKB:  P00742 | |||||
PHAROS:  P00742 GTEx:  ENSG00000126218  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00742 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
D93 Query on D93 | E [auth A] | N-((1R,2R)-2-(5-CHLORO-1H-INDOLE-2-CARBOXAMIDO)CYCLOHEXYL)-5-METHYL-4,5,6,7-TETRAHYDROTHIAZOLO[5,4-C]PYRIDINE-2-CARBOXAMIDE C23 H26 Cl N5 O2 S ARPFWVKYXJZULB-IAGOWNOFSA-N | |||
CA Query on CA | C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 56.963 | α = 90 |
b = 73.035 | β = 90 |
c = 79.849 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
CrystalClear | data collection |
d*TREK | data reduction |
d*TREK | data scaling |
REFMAC | phasing |